Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs2671860 chr12:59962778 T/C 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs2671861 chr12:59962780 C/T 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs274459 chr12:59951456 G/T 1.12E-5 372 24.63 18.53 10.4 KM Plot
CRC rs274460 chr12:59952341 A/G 1.42E-7 374 24.63 19.9 9.57 KM Plot
CRC rs274463 chr12:59955712 T/G 1.13E-5 372 24.63 18.53 10.4 KM Plot
CRC rs274465 chr12:59959501 C/T 1.14E-5 372 24.63 18.53 10.4 KM Plot
CRC rs274468 chr12:59960726 A/C 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs28376797 chr5:54667827 C/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs28381186 chr1:146684486 T/TA 7.44E-6 363 11.13 26.12 21.9 KM Plot
CRC rs28432326 chr5:54667875 T/C 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs28433747 chr19:42072353 A/C 3.76E-7 367 22.73 19.73 13.35 KM Plot
CRC rs28526277 chr5:54669549 G/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs2863673 chr4:132773067 C/T 7.47E-7 374 10.6 24.73 22.2 KM Plot
CRC rs28709791 chr19:42073031 T/A 3.76E-7 367 22.73 19.73 13.35 KM Plot
CRC rs2878308 chr7:61087890 G/A 1.17E-6 369 10.27 20.27 24.15 KM Plot